Resources for Public Researchers 

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Mapping the Sequence and Structure of Coronavirus

 

Datasets: 

1. https://www.kaggle.com/allen-institute-for-ai/CORD-19-research-challenge

2. https://cset.georgetown.edu/covid-19-open-research-dataset-cord-19/ 

3. https://www.whitehouse.gov/briefings-statements/call-action-tech-community-new-machine-readable-covid-19-dataset/ 

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COVID-19 GENOME

1. https://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=NC_045512v2%3A14951%2D24950&hgsid=799000851_rdDAOY8aECs6ODSPVUt92mNOp7fR  

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Genome 3D 

1. https://www.nature.com/collections/rsxlmsyslk  

2. https://advances.sciencemag.org/content/6/2/eaay4055 

3. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1519-9  

 

3D Structure - Covid 19

1. https://www.drugtargetreview.com/news/57287/3d-visualisation-of-covid-19-surface-released-for-researchers/  

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Agent Based Modeling and GIS Simulation of Infectious Disease Outbreaks

1. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0208775

 

References:

3d Form: Constructed using 3d models from Protein Data Bank shared by 

• http://korkinlab.org/wuhan

 

Tools: 

 

Opensource: http://genometools.org 

 

NVIDIA Parabricks Genome Sequencing and 3D Modeling

• • https://news.developer.nvidia.com/advancing-dna-sequencing/  

  • https://blogs.nvidia.com/blog/2019/12/17/ai-personalized-healthcare/  

  • https://www.drugtargetreview.com/news/57287/3d-visualisation-of-covid-19-surface-released-for-researchers/ 

 

Visuals Refs:

• • https://www.cdc.gov/coronavirus/2019-ncov/index.html

  • https://www.wpi.edu/news/wpi-researcher-shares-3d-roadmap-coronavirus-scientists-worldwide

  • https://www.fusionanimation.co.uk/clinical-areas/infectious-disease/covid-19/

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OPEN SOURCE VENTILATOR PROJECTS:

• https://opensourceventilator.ie

• https://e-vent.mit.edu

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PUBLIC INFORMATION RESOURCES:

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World Health Organization: https://www.who.int/emergencies/diseases/novel-coronavirus-2019

 

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INDIA:  https://www.mohfw.gov.in 

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United States: http://coronavirus.gov 

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Singapore: https://www.moh.gov.sg/covid-19  

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